Detailed information of SNP:
|
SNP ID:
sf0508401463(Gbrowse)
Chromosome: chr05 Position: 8401463 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1290 | 92.79% | 7.21% |
| All Indica | 763 | 99.87% | 0.13% |
| All Japonica | 408 | 78.19% | 21.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 100.00% | 0.00% |
| Indica II | 205 | 99.51% | 0.49% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 69.75% | 30.25% |
| Tropical Japonica | 74 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 92.45% | 7.55% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0508401463 | T->C | INTERGENIC | None |