Detailed information of SNP:
|
SNP ID:
sf0508706841(Gbrowse)
Chromosome: chr05 Position: 8706841 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1267 | 91.48% | 8.52% |
| All Indica | 762 | 99.74% | 0.26% |
| All Japonica | 387 | 73.13% | 26.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 100.00% | 0.00% |
| Indica II | 203 | 99.01% | 0.99% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 268 | 62.69% | 37.31% |
| Tropical Japonica | 66 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 92.45% | 7.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0508706841 | A->C | INTERGENIC | None |