Detailed information of SNP:
|
SNP ID:
sf0509011838(Gbrowse)
Chromosome: chr05 Position: 9011838 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 95.36% | 4.64% |
| All Indica | 757 | 91.94% | 8.06% |
| All Japonica | 458 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 91.36% | 8.64% |
| Indica II | 198 | 95.96% | 4.04% |
| Indica Intermediate | 200 | 89.00% | 11.00% |
| Temperate Japonica | 312 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509011838 | C->T | LOC_Os05g15960(LOC_Os05g15960.1) | INTRON |