Detailed information of SNP:
|
SNP ID:
sf0509049470(Gbrowse)
Chromosome: chr05 Position: 9049470 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 87.34% | 12.66% |
| All Indica | 781 | 82.97% | 17.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 206 | 73.30% | 26.70% |
| Indica Intermediate | 201 | 79.10% | 20.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509049470 | C->A | INTERGENIC | None |