Detailed information of SNP:
|
SNP ID:
sf0509202998(Gbrowse)
Chromosome: chr05 Position: 9202998 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 85.19% | 14.81% |
| All Indica | 798 | 82.08% | 17.92% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509202998 | T->C | LOC_Os05g16260(LOC_Os05g16260.1) | Non-Synonymous SNP |