Detailed information of SNP:
|
SNP ID:
sf0509208722(Gbrowse)
Chromosome: chr05 Position: 9208722 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 96.61% | 3.39% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509208722 | C->A | LOC_Os05g16270(LOC_Os05g16270.1) | INTRON |