Detailed information of SNP:
|
SNP ID:
sf0509261136(Gbrowse)
Chromosome: chr05 Position: 9261136 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 97.80% | 2.20% |
| All Indica | 787 | 96.32% | 3.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509261136 | A->G | LOC_Os05g16350(LOC_Os05g16350.1) | INTRON |