Detailed information of SNP:
|
SNP ID:
sf0509300302(Gbrowse)
Chromosome: chr05 Position: 9300302 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1316 | 95.90% | 4.10% |
| All Indica | 755 | 99.07% | 0.93% |
| All Japonica | 440 | 89.32% | 10.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 98.07% | 1.93% |
| Indica II | 192 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 100.00% | 0.00% |
| Temperate Japonica | 291 | 85.91% | 14.09% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 64 | 92.19% | 7.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509300302 | T->C | INTERGENIC | None |