Detailed information of SNP:
|
SNP ID:
sf0509333480(Gbrowse)
Chromosome: chr05 Position: 9333480 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1152 | 96.61% | 3.39% |
| All Indica | 680 | 96.62% | 3.38% |
| All Japonica | 359 | 96.10% | 3.90% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 324 | 95.99% | 4.01% |
| Indica II | 172 | 98.84% | 1.16% |
| Indica Intermediate | 184 | 95.65% | 4.35% |
| Temperate Japonica | 242 | 95.04% | 4.96% |
| Tropical Japonica | 68 | 97.06% | 2.94% |
| Japonica Intermediate | 49 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509333480 | A->C | INTERGENIC | None |