Detailed information of SNP:
|
SNP ID:
sf0509418161(Gbrowse)
Chromosome: chr05 Position: 9418161 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 95.87% | 4.13% |
| All Indica | 793 | 96.85% | 3.15% |
| All Japonica | 484 | 98.14% | 1.86% |
| Aus | 49 | 59.18% | 40.82% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 327 | 98.78% | 1.22% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509418161 | C->G | LOC_Os05g16610(LOC_Os05g16610.1) | INTRON |