Detailed information of SNP:
|
SNP ID:
sf0509750679(Gbrowse)
Chromosome: chr05 Position: 9750679 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1285 | 89.11% | 10.89% |
| All Indica | 718 | 82.73% | 17.27% |
| All Japonica | 451 | 99.78% | 0.22% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 338 | 89.64% | 10.36% |
| Indica II | 192 | 78.65% | 21.35% |
| Indica Intermediate | 188 | 74.47% | 25.53% |
| Temperate Japonica | 300 | 99.67% | 0.33% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 82.86% | 17.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509750679 | T->C | INTERGENIC | None |