Detailed information of SNP:
|
SNP ID:
sf0509795865(Gbrowse)
Chromosome: chr05 Position: 9795865 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 94.04% | 5.96% |
| All Indica | 793 | 94.83% | 5.17% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 41.27% | 58.73% |
| Indica I | 371 | 94.88% | 5.12% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509795865 | A->G | LOC_Os05g17120(LOC_Os05g17120.1) | INTRON |