Detailed information of SNP:
|
SNP ID:
sf0509797457(Gbrowse)
Chromosome: chr05 Position: 9797457 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 92.49% | 7.51% |
| All Indica | 787 | 87.42% | 12.58% |
| All Japonica | 490 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 85.05% | 14.95% |
| Indica II | 209 | 83.73% | 16.27% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509797457 | T->A | LOC_Os05g17120(LOC_Os05g17120.1) | Non-Synonymous SNP |