Detailed information of SNP:
|
SNP ID:
sf0509823659(Gbrowse)
Chromosome: chr05 Position: 9823659 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 96.31% | 3.69% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509823659 | T->C | LOC_Os05g17150(LOC_Os05g17150.1) | INTRON |