Detailed information of SNP:
|
SNP ID:
sf0509823981(Gbrowse)
Chromosome: chr05 Position: 9823981 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1294 | 95.05% | 4.95% |
| All Indica | 731 | 91.38% | 8.62% |
| All Japonica | 440 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 334 | 91.92% | 8.08% |
| Indica II | 199 | 96.48% | 3.52% |
| Indica Intermediate | 198 | 85.35% | 14.65% |
| Temperate Japonica | 289 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509823981 | T->A | LOC_Os05g17150(LOC_Os05g17150.1) | Non-Synonymous SNP |