Detailed information of SNP:
|
SNP ID:
sf0509824613(Gbrowse)
Chromosome: chr05 Position: 9824613 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 96.46% | 3.54% |
| All Indica | 796 | 98.49% | 1.51% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 46.15% | 53.85% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509824613 | G->A | LOC_Os05g17150(LOC_Os05g17150.1) | Non-Synonymous SNP |