Detailed information of SNP:
|
SNP ID:
sf0509902350(Gbrowse)
Chromosome: chr05 Position: 9902350 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 89.68% | 10.32% |
| All Indica | 770 | 83.38% | 16.62% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 361 | 92.24% | 7.76% |
| Indica II | 205 | 78.54% | 21.46% |
| Indica Intermediate | 204 | 72.55% | 27.45% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0509902350 | C->T | LOC_Os05g17280(LOC_Os05g17280.1) | Non-Synonymous SNP |