Detailed information of SNP:
SNP ID:
sf0509971138(Gbrowse)
Chromosome: chr05 Position: 9971138 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 94.43% | 5.57% |
All Indica | 799 | 96.25% | 3.75% |
All Japonica | 497 | 98.99% | 1.01% |
Aus | 67 | 38.81% | 61.19% |
Indica I | 375 | 98.13% | 1.87% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 90.05% | 9.95% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0509971138 | T->G | INTERGENIC | None |