Detailed information of SNP:



SNP ID: sf0509971138(Gbrowse)

Chromosome: chr05

Position: 9971138
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1419 94.43% 5.57%
All Indica799 96.25% 3.75%
All Japonica497 98.99% 1.01%
Aus67 38.81% 61.19%
Indica I375 98.13% 1.87%
Indica II213 99.06% 0.94%
Indica Intermediate211 90.05% 9.95%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0509971138 T->G INTERGENIC None