Detailed information of SNP:
|
SNP ID:
sf0510158210(Gbrowse)
Chromosome: chr05 Position: 10158210 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 97.59% | 2.41% |
| All Indica | 792 | 95.83% | 4.17% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0510158210 | C->T | LOC_Os05g17650(LOC_Os05g17650.1) | INTRON |