Detailed information of SNP:
|
SNP ID:
sf0510321219(Gbrowse)
Chromosome: chr05 Position: 10321219 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 95.95% | 4.05% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 28.81% | 71.19% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0510321219 | C->T | LOC_Os05g17960(LOC_Os05g17960.1) | SNPs that introduce stop codons |