Detailed information of SNP:
|
SNP ID:
sf0510324918(Gbrowse)
Chromosome: chr05 Position: 10324918 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 97.14% | 2.86% |
| All Indica | 794 | 99.62% | 0.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 55 | 40.00% | 60.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0510324918 | T->A | LOC_Os05g17960(LOC_Os05g17960.1) | Non-Synonymous SNP |