Detailed information of SNP:
|
SNP ID:
sf0510928604(Gbrowse)
Chromosome: chr05 Position: 10928604 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 94.04% | 5.96% |
| All Indica | 710 | 89.58% | 10.42% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 326 | 84.97% | 15.03% |
| Indica II | 191 | 91.10% | 8.90% |
| Indica Intermediate | 193 | 95.85% | 4.15% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0510928604 | C->T | LOC_Os05g18810(LOC_Os05g18810.1) | INTRON |