Detailed information of SNP:
|
SNP ID:
sf0511023819(Gbrowse)
Chromosome: chr05 Position: 11023819 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 97.51% | 2.49% |
| All Indica | 783 | 96.04% | 3.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 364 | 94.23% | 5.77% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0511023819 | C->T | INTERGENIC | None |