Detailed information of SNP:
|
SNP ID:
sf0511188993(Gbrowse)
Chromosome: chr05 Position: 11188993 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1164 | 87.71% | 12.29% |
| All Indica | 655 | 80.15% | 19.85% |
| All Japonica | 395 | 100.00% | 0.00% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 303 | 87.46% | 12.54% |
| Indica II | 178 | 77.53% | 22.47% |
| Indica Intermediate | 174 | 70.11% | 29.89% |
| Temperate Japonica | 269 | 100.00% | 0.00% |
| Tropical Japonica | 76 | 100.00% | 0.00% |
| Japonica Intermediate | 50 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 33 | 87.88% | 12.12% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0511188993 | A->G | INTERGENIC | None |