Detailed information of SNP:
|
SNP ID:
sf0511247022(Gbrowse)
Chromosome: chr05 Position: 11247022 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1277 | 96.24% | 3.76% |
| All Indica | 704 | 93.18% | 6.82% |
| All Japonica | 456 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 323 | 89.78% | 10.22% |
| Indica II | 193 | 96.37% | 3.63% |
| Indica Intermediate | 188 | 95.74% | 4.26% |
| Temperate Japonica | 309 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0511247022 | G->A | INTERGENIC | None |