Detailed information of SNP:
|
SNP ID:
sf0511470896(Gbrowse)
Chromosome: chr05 Position: 11470896 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 91.51% | 8.49% |
| All Indica | 794 | 93.32% | 6.68% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0511470896 | A->G | INTERGENIC | None |