Detailed information of SNP:
|
SNP ID:
sf0511679590(Gbrowse)
Chromosome: chr05 Position: 11679590 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1250 | 79.92% | 20.08% |
| All Indica | 701 | 65.62% | 34.38% |
| All Japonica | 429 | 99.07% | 0.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 326 | 62.88% | 37.12% |
| Indica II | 179 | 51.40% | 48.60% |
| Indica Intermediate | 196 | 83.16% | 16.84% |
| Temperate Japonica | 294 | 99.66% | 0.34% |
| Tropical Japonica | 78 | 98.72% | 1.28% |
| Japonica Intermediate | 57 | 96.49% | 3.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0511679590 | T->C | LOC_Os05g19974(LOC_Os05g19974.1) | INTRON |
| sf0511679590 | T->C | LOC_Os05g19974(LOC_Os05g19974.2) | INTRON |