Detailed information of SNP:
|
SNP ID:
sf0511832166(Gbrowse)
Chromosome: chr05 Position: 11832166 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 91.87% | 8.13% |
| All Indica | 787 | 98.86% | 1.14% |
| All Japonica | 492 | 82.32% | 17.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0511832166 | C->T | INTERGENIC | None |