Detailed information of SNP:
|
SNP ID:
sf0511846771(Gbrowse)
Chromosome: chr05 Position: 11846771 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1348 | 66.91% | 33.09% |
| All Indica | 742 | 90.57% | 9.43% |
| All Japonica | 484 | 25.41% | 74.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 87.72% | 12.28% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 191 | 92.15% | 7.85% |
| Temperate Japonica | 324 | 7.41% | 92.59% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0511846771 | G->A | LOC_Os05g20230(LOC_Os05g20230.1) | Synonymous |