Detailed information of SNP:
|
SNP ID:
sf0511944886(Gbrowse)
Chromosome: chr05 Position: 11944886 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 96.42% | 3.58% |
| All Indica | 791 | 99.49% | 0.51% |
| All Japonica | 457 | 90.37% | 9.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.92% | 1.08% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 87.99% | 12.01% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 59 | 89.83% | 10.17% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0511944886 | T->C | INTERGENIC | None |