Detailed information of SNP:
|
SNP ID:
sf0512094401(Gbrowse)
Chromosome: chr05 Position: 12094401 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1149 | 81.81% | 18.19% |
| All Indica | 651 | 98.46% | 1.54% |
| All Japonica | 384 | 49.48% | 50.52% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 301 | 97.34% | 2.66% |
| Indica II | 168 | 99.40% | 0.60% |
| Indica Intermediate | 182 | 99.45% | 0.55% |
| Temperate Japonica | 263 | 33.84% | 66.16% |
| Tropical Japonica | 72 | 93.06% | 6.94% |
| Japonica Intermediate | 49 | 69.39% | 30.61% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0512094401 | A->G | LOC_Os05g20620(LOC_Os05g20620.1) | Non-Synonymous SNP |
| sf0512094401 | A->G | LOC_Os05g20620(LOC_Os05g20620.2) | Non-Synonymous SNP |