Detailed information of SNP:
|
SNP ID:
sf0512238307(Gbrowse)
Chromosome: chr05 Position: 12238307 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 93.23% | 6.77% |
| All Indica | 745 | 88.72% | 11.28% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 341 | 85.63% | 14.37% |
| Indica II | 204 | 89.22% | 10.78% |
| Indica Intermediate | 200 | 93.50% | 6.50% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0512238307 | G->A | LOC_Os05g20840(LOC_Os05g20840.1) | Synonymous |