Detailed information of SNP:
|
SNP ID:
sf0512269774(Gbrowse)
Chromosome: chr05 Position: 12269774 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 95.04% | 4.96% |
| All Indica | 745 | 91.14% | 8.86% |
| All Japonica | 484 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 341 | 85.04% | 14.96% |
| Indica II | 200 | 96.00% | 4.00% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 329 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0512269774 | G->A | INTERGENIC | None |