Detailed information of SNP:
|
SNP ID:
sf0512327243(Gbrowse)
Chromosome: chr05 Position: 12327243 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1161 | 80.96% | 19.04% |
| All Indica | 670 | 98.36% | 1.64% |
| All Japonica | 373 | 44.77% | 55.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 313 | 97.12% | 2.88% |
| Indica II | 176 | 99.43% | 0.57% |
| Indica Intermediate | 181 | 99.45% | 0.55% |
| Temperate Japonica | 252 | 26.59% | 73.41% |
| Tropical Japonica | 70 | 92.86% | 7.14% |
| Japonica Intermediate | 51 | 68.63% | 31.37% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0512327243 | C->T | LOC_Os05g20954(LOC_Os05g20954.2) | INTRON |
| sf0512327243 | C->T | LOC_Os05g20954(LOC_Os05g20954.4) | INTRON |
| sf0512327243 | C->T | LOC_Os05g20954(LOC_Os05g20954.3) | INTRON |