Detailed information of SNP:
|
SNP ID:
sf0512603185(Gbrowse)
Chromosome: chr05 Position: 12603185 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1193 | 97.07% | 2.93% |
| All Indica | 675 | 94.96% | 5.04% |
| All Japonica | 399 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 305 | 95.08% | 4.92% |
| Indica II | 186 | 95.70% | 4.30% |
| Indica Intermediate | 184 | 94.02% | 5.98% |
| Temperate Japonica | 264 | 100.00% | 0.00% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 54 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0512603185 | G->C | INTERGENIC | None |