Detailed information of SNP:
|
SNP ID:
sf0512647041(Gbrowse)
Chromosome: chr05 Position: 12647041 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 90.14% | 9.86% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 492 | 73.37% | 26.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 330 | 63.03% | 36.97% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0512647041 | G->C | LOC_Os05g22390(LOC_Os05g22390.1) | Synonymous |