Detailed information of SNP:
|
SNP ID:
sf0512682741(Gbrowse)
Chromosome: chr05 Position: 12682741 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 97.56% | 2.44% |
| All Indica | 731 | 95.90% | 4.10% |
| All Japonica | 463 | 99.78% | 0.22% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 352 | 96.31% | 3.69% |
| Indica II | 182 | 93.41% | 6.59% |
| Indica Intermediate | 197 | 97.46% | 2.54% |
| Temperate Japonica | 312 | 99.68% | 0.32% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0512682741 | G->T | LOC_Os05g22440(LOC_Os05g22440.1) | INTRON |