Detailed information of SNP:
|
SNP ID:
sf0512756975(Gbrowse)
Chromosome: chr05 Position: 12756975 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 72.16% | 27.84% |
| All Indica | 771 | 94.29% | 5.71% |
| All Japonica | 455 | 42.64% | 57.36% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 366 | 95.90% | 4.10% |
| Indica II | 200 | 97.00% | 3.00% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 316 | 27.22% | 72.78% |
| Tropical Japonica | 80 | 88.75% | 11.25% |
| Japonica Intermediate | 59 | 62.71% | 37.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0512756975 | C->T | LOC_Os05g22560(LOC_Os05g22560.1) | Synonymous |