Detailed information of SNP:
|
SNP ID:
sf0512782744(Gbrowse)
Chromosome: chr05 Position: 12782744 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1330 | 92.71% | 7.29% |
| All Indica | 788 | 99.87% | 0.13% |
| All Japonica | 423 | 77.78% | 22.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 70.46% | 29.54% |
| Tropical Japonica | 81 | 95.06% | 4.94% |
| Japonica Intermediate | 61 | 88.52% | 11.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0512782744 | C->T | INTERGENIC | None |