Detailed information of SNP:
|
SNP ID:
sf0513195418(Gbrowse)
Chromosome: chr05 Position: 13195418 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 94.70% | 5.30% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513195418 | A->C | LOC_Os05g23220(LOC_Os05g23220.1) | INTRON |