Detailed information of SNP:
|
SNP ID:
sf0513195838(Gbrowse)
Chromosome: chr05 Position: 13195838 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 96.87% | 3.13% |
| All Indica | 788 | 94.54% | 5.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 95.96% | 4.04% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513195838 | T->A | LOC_Os05g23220(LOC_Os05g23220.1) | INTRON |