Detailed information of SNP:
|
SNP ID:
sf0513268468(Gbrowse)
Chromosome: chr05 Position: 13268468 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 80.42% | 19.58% |
| All Indica | 743 | 67.43% | 32.57% |
| All Japonica | 484 | 99.79% | 0.21% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 346 | 73.12% | 26.88% |
| Indica II | 194 | 71.65% | 28.35% |
| Indica Intermediate | 203 | 53.69% | 46.31% |
| Temperate Japonica | 327 | 99.69% | 0.31% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513268468 | C->T | INTERGENIC | None |