Detailed information of SNP:
|
SNP ID:
sf0513321169(Gbrowse)
Chromosome: chr05 Position: 13321169 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 93.42% | 6.58% |
| All Indica | 773 | 88.36% | 11.64% |
| All Japonica | 476 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 362 | 82.04% | 17.96% |
| Indica II | 202 | 94.06% | 5.94% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 318 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513321169 | G->A | LOC_Os05g23420(LOC_Os05g23420.1) | Non-Synonymous SNP |