Detailed information of SNP:
|
SNP ID:
sf0513403171(Gbrowse)
Chromosome: chr05 Position: 13403171 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 95.30% | 4.70% |
| All Indica | 764 | 99.08% | 0.92% |
| All Japonica | 457 | 88.40% | 11.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 98.33% | 1.67% |
| Indica II | 201 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 99.51% | 0.49% |
| Temperate Japonica | 314 | 85.67% | 14.33% |
| Tropical Japonica | 83 | 98.80% | 1.20% |
| Japonica Intermediate | 60 | 88.33% | 11.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513403171 | C->T | INTERGENIC | None |