Detailed information of SNP:
|
SNP ID:
sf0513461388(Gbrowse)
Chromosome: chr05 Position: 13461388 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 95.28% | 4.72% |
| All Indica | 777 | 99.10% | 0.90% |
| All Japonica | 479 | 88.31% | 11.69% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 98.10% | 1.90% |
| Indica II | 200 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 85.37% | 14.63% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513461388 | A->T | INTERGENIC | None |