Detailed information of SNP:
|
SNP ID:
sf0513491735(Gbrowse)
Chromosome: chr05 Position: 13491735 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 98.08% | 1.92% |
| All Indica | 753 | 96.55% | 3.45% |
| All Japonica | 483 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 354 | 94.07% | 5.93% |
| Indica II | 196 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 97.54% | 2.46% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513491735 | C->T | INTERGENIC | None |