Detailed information of SNP:
|
SNP ID:
sf0513492519(Gbrowse)
Chromosome: chr05 Position: 13492519 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1152 | 78.21% | 21.79% |
| All Indica | 643 | 62.36% | 37.64% |
| All Japonica | 397 | 98.74% | 1.26% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 289 | 48.79% | 51.21% |
| Indica II | 175 | 65.14% | 34.86% |
| Indica Intermediate | 179 | 81.56% | 18.44% |
| Temperate Japonica | 276 | 99.28% | 0.72% |
| Tropical Japonica | 68 | 98.53% | 1.47% |
| Japonica Intermediate | 53 | 96.23% | 3.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 87.88% | 12.12% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513492519 | C->T | INTERGENIC | None |