Detailed information of SNP:
|
SNP ID:
sf0513604456(Gbrowse)
Chromosome: chr05 Position: 13604456 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1224 | 59.31% | 40.69% |
| All Indica | 673 | 94.80% | 5.20% |
| All Japonica | 437 | 13.96% | 86.04% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 308 | 96.10% | 3.90% |
| Indica II | 180 | 96.11% | 3.89% |
| Indica Intermediate | 185 | 91.35% | 8.65% |
| Temperate Japonica | 300 | 9.00% | 91.00% |
| Tropical Japonica | 84 | 26.19% | 73.81% |
| Japonica Intermediate | 53 | 22.64% | 77.36% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 35 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513604456 | G->A | INTERGENIC | None |