Detailed information of SNP:
|
SNP ID:
sf0513639145(Gbrowse)
Chromosome: chr05 Position: 13639145 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 71.71% | 28.29% |
| All Indica | 795 | 83.40% | 16.60% |
| All Japonica | 496 | 59.27% | 40.73% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 373 | 78.02% | 21.98% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 45.67% | 54.33% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513639145 | G->A | LOC_Os05g23830(LOC_Os05g23830.1) | INTRON |