Detailed information of SNP:



SNP ID: sf0513844337(Gbrowse)

Chromosome: chr05

Position: 13844337
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1412 95.25% 4.75%
All Indica792 96.21% 3.79%
All Japonica497 96.78% 3.22%
Aus67 80.60% 19.40%
Indica I370 95.95% 4.05%
Indica II211 96.68% 3.32%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 88.30% 11.70%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 57.14% 42.86%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0513844337 G->A LOC_Os05g24100(LOC_Os05g24100.1) Synonymous