Detailed information of SNP:
|
SNP ID:
sf0513844337(Gbrowse)
Chromosome: chr05 Position: 13844337 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 95.25% | 4.75% |
| All Indica | 792 | 96.21% | 3.79% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513844337 | G->A | LOC_Os05g24100(LOC_Os05g24100.1) | Synonymous |